Research on structured prediction and efficient architectures for 3D medical imaging, funded by MedTech West. Thesis: Centerline Extraction for Tubular Trees in Medical Images.
Custom transformer, CNN, and recurrent architectures for structured prediction, image-to-graph modelling, segmentation, detection, and registration in 2D and 3D. Efficient and mixed-resolution designs, plus semi-supervised, self-supervised, and reinforcement learning.
Python, PyTorch, TensorFlow, CUDA, C++, MATLAB, SQL. NumPy, SciPy, pandas, scikit-learn, OpenCV, SimpleITK.
Large-scale multi-GPU training on Swedish national HPC (NAISS, Berzelius, Mimer) as project PI. SLURM, containerised environments, custom CUDA kernels, GPU profiling and memory optimisation.
Building and publicly releasing benchmark datasets for image segmentation and spatial graphs. Custom metrics, benchmark design, and failure-mode analysis. Large-scale multimodal data (CT, MRI, endoscopy, natural images, text), including sensitive patient data under ethics approval.
Git, Bash, Conda, Docker, Linux, Google Cloud. Experiment tracking with Weights & Biases and Neptune. Android development.